Law, K. M., Komarova, N. L., Yewdall, A. W., Lee, R. K., Herrera, O. L., Wodarz, D., & Chen, B. K. (2016). In Vivo HIV-1 Cell-to-Cell Transmission Promotes Multicopy Micro-compartmentalized Infection. Cell Reports 15(12), 2771--2783.

Asatrian, A., Wodarz, D. and Komarova, N.L. (2015) New virus dynamics in the presence of coinfection. Journal of Theoretical Biology 377:98-109.

Foo, J.Y., Haskell, C., Komarova, N.L., Segal, R.A., and Wood, K.E. (2014) Modeling sympatric speciation in quasiperiodic environments. In Applications of Dynamical Systems in Biology and Medicine (pp. 149-174). Springer New York.

Wodarz, D., Chan, C., Trinite, B., Komarova, N.L. and Levy, D. (2014) On the laws of virus spread through cell populations. Journal of virology, 88(22), 13240-13248.

Komarova, N. L. (2014). Spatial interactions and cooperation can change the speed of evolution of complex phenotypes. Proceedings of the National Academy of Sciences, 201400828.

Wodarz, D., Sorace, R., and Komarova, N.L. (2014)Dynamics of cellular responses to radiation. PLoS Computational Biology , 10(4), e1003513.

Komarova, N.L., Levy, D. and Wodarz, D. (2013) Synaptic transmission and the susceptibility of HIV infection to anti-viral drugs. Scientific Reports 3, 1--8.

Wodarz, D, Sun, Z., Lau, J.W., Komarova, N.L. (2013) Nearest neighbor interactions, habitat fragmentation, and the persistence of host-pathogen systems. The American Naturalist, 182(3), E94-E111.

Komarova, N.L., Wodarz, D. (2013) Virus dynamics in the presence of synaptic transmission. Math Biosci. 242(2), pp. 161--171.

Komarova, N.L., Anghelina, D., Voznesensky, I., Trinite, B., Levy, D., Wodarz, D. (2013) Relative contribution of free virus and synaptic transmission to the spread of HIV through target cell populations. Biology Letters 9(1).

Hofacre, A., Wodarz, D, Komarova, N.L., Fan, H. (2012) Early infection and spread of a conditionally replicating adenovirus under conditions of plaque formation. Virology 423(1), 89--96.

Thalhauser, C.J., Komarova, N.L. (2012) Alzheimer's disease: rapid and slow progression. Roy. Soc. of London Interface 9(66) 119-126.

Komarova, N.L., Levy, D., Wodarz, D. (2012) Relative contribution of free virus and synaptic transmission to the spread of HIV through target cell populations. To appear in Biology Letters.

Komarova N.L., Levy D.N., Wodarz D. (2012) Effect of synaptic transmission on viral fitness in HIV infection. To appear in PLoS ONE.

Komarova, N.L. (2012) Axiomatic modeling in life sciences. To appear in ``Mathematics and Life Sciences'', ed. by R. V. N. Melnik and A. V. Antoniouk, De Gruyter.

Wodarz, D., Hofacre, A., Lau, J.W., Sun, Z., Fan, H., Komarova, N.L. (2012) Complex spatial dynamics of oncolytic viruses in vitro: mathematical and experimental approaches. PLoS Computational Biology, 8(6): e1002547.

Hofacre, A., Wodarz, D, Komarova, N.L., Fan, H. (2012) Early infection and spread of a conditionally replicating adenovirus under conditions of plaque formation. Virology 423(1), 89--96.

Thalhauser, C.J., Komarova, N.L. (2012) Alzheimer's disease: rapid and slow progression. Roy. Soc. of London Interface 9(66) 119-126.

Thalhauser, C.J., Komarova, N.L. (2011) Calculating stage duration statistics in multistage diseases. PLoS One 6(12): e28298.

Komarova, N.L., Thalhauser, C.J. (2011) High degree of heterogeneity in Alzheimer's disease progression patterns. PLoS Comput Biol 7(11): e1002251.

Komarova, N.L. (2011) ``Evolutionary rate''. Brenner's Online Encyclopedia of Genetics, edited by Stanley Maloy and Kelly Hughes, 2nd edition.

Thalhauser CJ, Komarova NL. (2010) Signal response sensitivity in the yeast mitogen-activated protein kinase cascade. PLoS One.

Thalhauser, C.J and Komarova, N.L. (2008) Specificity and robustness of the mammalian MAPK-IEG network. To appear in Biophys. Journ.

Komarova NL. (2007) Viral reproductive strategies: How can lytic viruses be evolutionarily competitive? Jour Theor Biol. 249(4):766-84.

Komarova, N.L., Zou, X., Nie, Q. & Bardwell, L. (2007) Mathematical Models of Specificity in Cell Signaling Biophys Jour. 92(10), pp. 3425-41

Komarova, N.L., Zou, X., Nie, Q. & Bardwell, L. (2005) A theoretical framework for specificity in cell signaling. Molecular Systems Biol. doi:10.1038/msb4100031, E1-E5

Komarova, N.L. & Soffer, A. (2005) Nonlinear waves in double-stranded DNA. Bull. Math. Biol. 67(4), pp. 701-718, also arXiv:cond-mat/0411621

Krakauer, D.C. and Komarova, N.L. (2003) Levels of selection in positive strand virus dynamics. Journ. Evol. Biol. 16(1), p. 64-73.

Wei, X., Decker, J.M., Wang, S., Hui, H., Kappes, J.C., Wu, X., Salazar, J.F., Salazar, M.G., Kilby, J.M., Saag, M.S., Komarova, N.L., Nowak, M.A., Hahn, B.H., Kwong, P.D. & Shaw, G.M. (2003) Antibody Neutralization and Escape by HIV-1. Nature, 422, pp.307-312.

Komarova, N.L., Barnes, E., Klenerman, P. & Wodarz, D. (2003) Boosting immunity by anti-viral drug therapy: a simple relationship between timing, efficacy and success. Proc. Natl. Acad. Sci. 100(4), pp.1855-1860.