- 39 T. Moore, C.S. Chou, Q. Nie, Jeon, N.L. and T. M. Yi. Robust Spatial Sensing of
Mating Pheromone Gradients by Yeast Cells. PLoS ONE, 3(12):e3865, 2008.
- 38. A. Lander, Q. Nie, F. Wan, Y. Zhang. Localized Ectopic Expression of Dpp Receptors
in a Drosophila Embryo. Studies in Applied Mathematics, accepted, 2008.
- 37. S. Chou, S. Zhao, Y. Song, H. LIu, and Q. Nie. Fus3-Triggered Tec1 Degradation Modulates Mating Transcriptional Output during the Pheromone Response. Nature Molecular Systems Biology, 4:212, 2008. [supplementary Info]
- 36. C. Chou, Q. Nie, and T. Yi. Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients. PLoS ONE, 3(9):e3103, 2008.
- 35. Q. Nie, F.Y.M. Wan, Y-T Zhang, and X-F Liu. Compact Integration Factor Methods in High Spatial Dimensions. Journal of Computational Physics, 227(10), pp 5238-5255, 2008.
- 34. D. Iron, A. Syed, H. Theisen, T. Lukacsovich, M. Naghibi, L.J. Marsh, F.Y.M. Wan, and Q. Nie. The Role of Feedback in the Formation of Morphogen Territories. Mathematical Biosciences of Engineering, 5(2), pp 277-298, 2008.
- 33. R. White, Q. Nie, L. Lander, and T. Schilling. Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo. PLoS Biology, 5(11), e304, 2007. (Press Release)
- 32. Y. Zhang, A. Lander and Q. Nie. Computational Analysis of BMP Gradients in Dorsal-ventral Patterning of the Zebrafish Embryo. Journal of Theoretical Biology, 248, pp 579-589, 2007.
- 31. L. Bardwell, X. Zou, Q. Nie, and N. Kamorova. Mathematical Models of Specificity in Cell Signaling. Biophysical Journal. 92, pp 3425-3441, 2007.
- 30. T. Yi, S. Chen, C. Chou, and Q. Nie. Modeling Yeast Cell Polarization Induced by Pheromone Gradients. J. of Statistical Physics. 128(1), pp 193-207, 2007.
- 29. C. Chou, Y. Zhang, R. Zhao, and Q. Nie. Numerical Methods for Stiff Reaction-Diffusion Systems. Discrete and Continuous Dynamical System-B, 7(3), pp 515-525, 2007.
- 28. X. Li, V. Cristini, Q. Nie, and J. Lowengrub Nonlinear Three-Dimensional Simulation of Solid Tumor Growth. Siscrete abd Continuous System-B, 7(3), pp 581-604, 2007.
- 27. A. Lander, Q. Nie and F. Wan. Membrane Associated Non-receptors and Morphogen Gradients. Bulletin of Mathematical Biology, 69, pp 33-54, 2007.
- 26. H. Theisen, A. Syed, B. Nguyen, T. Lukasovich, J. Purcell, G. Srivastava, D. Irons, K. Gaudenz, Q. Nie, F. Wan, M. Waterman, and J. Marsh. Wingless Directly Represses DPP Morphogen Expression via an Armadillo/TCF/Brinker Complex. PLoS ONE, 2(1): e142, 2007.
- 25. X. Li and Q. Nie. Surface Diffusion on Stressed Solid Surface. Communications in Computational Physics, 2(1), pp 73-86, 2007.
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