Publications

The kinetochore corona orchestrates chromosome congression through transient microtubule interactions
CE Miles, F Renda, I Tikhonenko, A Alfieri, A Mogilner, A Khodjakov
submitted
, 2025
BiLO: Bilevel Local Operator Learning for PDE Inverse Problems. Part I: PDE-Constrained Optimization
RZ Zhang, CE Miles, X Xie, JS Lowengrub
submitted
, 2025
BiLO: Bilevel Local Operator Learning for PDE Inverse Problems. Part II: Efficient Uncertainty Quantification with Low-Rank Adaptation
RZ Zhang, CE Miles, X Xie, JS Lowengrub
submitted
, 2025
Scalable inference and identifiability of kinetic parameters for transcriptional bursting from single cell data
J Gu, N Laszik, CE Miles, J Allard, TL Downing, EL Read
Bioinformatics
, 2025
Mechanistic inference of stochastic gene expression from structured single-cell data (review)
CE Miles
Current Opinion in Systems Biology
, 2025
Revisiting Murray's Law in Pulmonary Arteries: Exploring Branching Patterns and Principles
SA Correa, A Kachabi, M Colebank, CE Miles, N Chelser
Journal of Biomechanical Engineering
, 2025
Incorporating spatial diffusion into bursty stochastic models of transcription
CE Miles
Royal Society Interface
, 2025
Computational modeling reveals a catch-and-guide interaction between kinesin-1 and tubulin C-terminal tails
T Nguyen, SP Gross, CE Miles
Traffic
, 2025
Coaching ribosome biogenesis from the nuclear periphery
Y Zhuang, X Guo, OV Razorenova, CE Miles, W Zhao, X Shi
submitted
, 2024
Dynamical mixture modeling with fast, automatic determination of Markov chains
CE Miles, RJ Webber
submitted
, 2024
Inferring stochastic rates from heterogeneous snapshots of particle positions
CE Miles, SA McKinley, F Ding, RB Lehoucq
Bulletin of Math Biology
, 2024
Competition between physical search and a weak-to-strong transition rate-limits kinesin binding times
T Nguyen, BJN Reddy, SP Gross, CE Miles
PLoS Computational Biology
, 2024
Mathematicians Convene at 2023 Southern California Applied Mathematics Symposium (SoCAMS)
M Aminian, K Kurianski, A Ma, CE Miles
SIAM News
, 2023
Intrinsic statistical separation of subpopulations in heterogeneous collective motion via dimensionality reduction
P Tan, CE Miles
Phys Rev E
, 2023
Stochastic switching of delayed feedback suppresses oscillations in genetic regulatory systems
BR Karamched, CE Miles
Royal Society Interface
, 2023
Coarse-grained dynamics of transiently-bound fast linkers
S Marbach, CE Miles
Journal of Chemical Physics
, 2023
Mechano-sensing in actin networks: capping it off for robustness
CE Miles, A Mogilner
Current Biology (dispatch)
, 2022
Non-centrosomal microtubules at kinetochores promote rapid chromosome biorientation during mitosis in human cells
F Renda, CE Miles, ..., A Mogilner, A Khodjakov
Current Biology
, 2022
Mechanical torque promotes bipolarity of the mitotic spindle
CE Miles, J Zhu, A Mogilner
Bulletin of Mathematical Biology
, 2022
Collective Molecular Motor Transport
CE Miles, A Mogilner
Case Studies in Systems Biology (book)
, 2021
Effects of malleable kinetochore morphology on measurements of intrakinetochore tension
F Renda, ..., CE Miles, A Mogilner, A Khodjakov
Open Biology
, 2020
Actin-Membrane Release Initiates Cell Protrusions
ES Welf, CE Miles, ..., A Mogilner, G Danuser
Developmental Cell
, 2020
Receptor organization shapes the limits of single-cell direction sensing
SD Lawley, AE, Lindsay, CE Miles
Physical Review Letters
, 2020
Diffusive search for diffusing targets with fluctuating diffusivity and reactivity
SD Lawley, CE Miles
Journal of Nonlinear Science
, 2019
Complex nearly immotile behavior of microtubule-associated cargos
O Osunbayo, CE Miles, BJ Reddy, JP Keener, MD Vershinin
Soft Matter
, 2019
How receptor surface diffusion and cell rotation enhance association rates
SD Lawley, CE Miles
SIAM Journal on Applied Mathematics
, 2019
Analysis of non-processive molecular motor transport using renewal reward theory
CE Miles, SD Lawley, JP Keener
SIAM Journal on Applied Mathematics
, 2018
Jump locations of jump-diffusion processes with state-dependent rates
CE Miles, JP Keener
Journal of Physics A: Mathematical & Theoretical,
2017
Bidirectionality from cargo thermal fluctuations in motor-mediated transport
CE Miles, JP Keener
Journal Theoretical Biology,
2017