A second order virtual node algorithm for Poisson Interface Problems on Irregular Domains

Speaker: 

Professor Joseph Teran

Institution: 

UCLA

Time: 

Monday, October 18, 2010 - 4:00pm

Location: 

RH 306

I will present a second order accurate, geometrically flexible and easy to implement method for solving the variable coefficient Poisson equation with interfacial discontinuities on an irregular domain. We discretize the equations using an embedded approach on a uniform Cartesian grid employing virtual nodes at interfaces and boundaries. A variational method is used to define numerical stencils near these special virtual nodes and a Lagrange multiplier approach is used to enforce jump conditions and Dirichlet boundary conditions. Our combination of these two aspects yields a symmetric positive definite discretization. In the general case, we obtain the standard 5-point stencil away from the interface. For the specific case of interface problems with continuous coefficients, we present a discontinuity removal technique that admits use of the standard 5-point finite difference stencil everywhere in the domain. Numerical experiments indicate second order accuracy in L-infinty.

A boundary integral method for simulating the dynamics of an epitaxial island

Speaker: 

Professor Shuwang Li

Institution: 

Illinois Institute of Technology

Time: 

Monday, October 11, 2010 - 4:00pm

Location: 

RH 306

Epitaxial crystal growth by depositing atoms from a gas phase onto a substrate is a nonequilibrium process involving both kinetics and thermodynamics. At the early stages of growth, adatoms on the substrate often form small isolated islands. The morphological evolution (e.g. growth or shrink) of these islands is determined by many physical processes such as atom adsorption and desorption, adatom diffusion, adatom attachment to island boundaries or detachment from the boundaries. Mathematical formulation of the problem leads to a moving boundary/interface problem.

In this talk, we present a boundary integral method for computing the quasisteady evolution of an epitaxial island. The problem consists of an adatom diffusion equation (with desorption) on terrace and a kinetic boundary condition at the step (island boundary). The normal velocity for step motion is determined by a two-sided flux. The integral formulation of the problem involves both double and single layer potentials due to the kinetic boundary condition. Numerical tests on a growing/shrinking island are in excellent agreement with the analytical solution and demonstrate that the method is stable, efficient and spectrally accurate in space.
Nonlinear simulations for the growth of perturbed circular islands show that sharp tips and facets will form during growth instead of the usual tip-splitting events for isotropic Laplacian growth. The numerical techniques presented here can be applied generally to a class of free/moving boundary problems in physical and biological science.

Mathematical and statistical methods for quantifying the uncertainties in the assessment and detection of climate changes

Speaker: 

Professor Samuel Shen

Institution: 

San Diego State University

Time: 

Monday, October 4, 2010 - 4:00pm

Location: 

RH 306

This lecture will describe the mathematical and statistical methods of estimating the errors in the optimal assessment of the past climate change, quantifying the uncertainties in the climate change detection, and analyzing the main uncertainty sources for climate predictions. Empirical orthogonal functions are extensively used to deal with spatial inhomogeneity. Temporal non-stationarity and model nonlinearity will be discussed. Detailed error analyses of the annual mean global and regional averages of the surface air temperature since 1861 will be presented.

Non-essential sites improve phosphorylation switch

Speaker: 

Professor German Enciso

Institution: 

UCI

Time: 

Monday, September 27, 2010 - 4:00pm

Location: 

RH 306

Multisite phosphorylation is a common form of post-translational protein regulation which has been used to increase the switch-like behavior of the protein response to increasing kinase concentrations. In this talk we show that the switch-like response of multisite phosphoproteins is strongly enhanced by non-essential phosphorylation sites, a mechanism that is robust to parameter changes and easily implemented in nature. We describe analytic estimates for the Hill exponent of the switch-like response and suggest a possible evolutionary mechanism for the relatively large numbers of phosphorylation sites found in various proteins.

Modeling and Numerical studies of PEM Fuel Cell Via a Novel Automated FEM/FVM Program Generation

Speaker: 

Professor Pengtao Sun

Institution: 

University of Nevada, Las Vegas

Time: 

Monday, September 20, 2010 - 4:00pm

Location: 

RH 306

This talk is dedicated to the studies of a three-dimensional, nonisothermal, anisotropic, two-phase transport model of proton exchange membrane fuel cell (PEMFC) and its efficient numerical method. Besides addressing the conservation equations of mass, momentum, species, charge and energy in view of the nonisothermality, anisotropy and multiphase flow in PEMFC model, from an efficient numerical method's point of view, we present some new formulations for species equations in the interests of the interactions among the species. In a framework of finite element-upwind finite volume method, some efficient numerical methods are designed and investigated in order to achieve fast and convergent numerical simulation for this PEMFC model.

Numerical implementation is done by using a novel automated finite element/finite volume program generator (FEPG). By virtue of a high-level algorithm description language (script), component programming and human intelligence technologies, FEPG can quickly generate finite element/finite volume source code for PEMFC simulation. Thus, one can focus on the efficient algorithm research without being distracted by the tedious computer programming on finite element/finite volume methods. The 3D numerical simulations demonstrate that a convergent and reasonable physical solution can be attained within 100 steps or so, comparing to the oscillating and nonconvergent nonlinear iterations conducted by the standard finite element/finite volume method. Numerical success demonstrates that FEPG is an efficient tool for both algorithm research and software development of a 3D multiphysics PEMFC model.

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