TOPOLOGICAL ANALYSIS OF 3-D NETWORKS: Relation to the Kelvin Problem

Speaker: 

Dr M. Glicksman

Institution: 

Rensselaer Polytechnic Institute

Time: 

Monday, February 13, 2006 - 4:00pm

Location: 

MSTB 254

Network structures, such as polycrystals, foams, and biological tissues consist of space-filling polyhedral grains, bubbles, or cells, respectively. The irregularity of such physical polyhedra derives from the fact that their faces consist of mixed shapes, their edges are of varying length, and the positions of their vertices are arranged non-symmetrically. The geometric complexity of irregular polyhedra forming 3-d networks makes their analysis difficult. To help circumvent this difficulty, average N-hedra (ANHs) are proposed as a set of regular polyhedra consisting of N identical faces. ANHsonly a few of which are constructibleact as abstract proxies for each corresponding topological class of irregular network polyhedra with the same number of faces. This study provides a comparison of the intrinsic areas and volumes of ANHs with data estimated numerically using Brakkes Surface Evolver simulations for a range of constructible polyhedral cells. Evolver data show that for every topological class, ANHs always provide a sharp upper bound for the isoperimetric quotient, which is a measure of the inverse energy cost of the cell. Of special interest also is demonstrating that the critical ANH, which has both zero mean and Gaussian curvature, satisfies Kusners bound for the average number of faces in a minimally partitioned network. In Euclidean 3-space the requisite number of faces is satisfied exactly by the critical ANH. The critical ANH, therefore, statistically represents the abstract unit cell that solves the so-called Kelvin Problem for a space-filling 3-d network exhibiting the minimum partition energy or surface area. This limit remains of particular interest in the case of annealed polycrystals and dry foams, as it establishes the lower bound of the energy cost of cellular random structures with a given metric gauge.

Motor potential profile of molecular motors

Speaker: 

Dr Hongyun Wang

Institution: 

UC Santa Cruz, Department of Applied Mathematics & Statistics

Time: 

Monday, February 27, 2006 - 4:00pm

Location: 

MSTB 254

The small size of molecular motors has hindered, in many ways,
the studies of their physical mechanisms. In this study, we
take the advantage of the small size of molecular motors to
reconstruct the motor potential profile from time series of
motor positions measured in single molecule experiments. The
chemical reaction in a molecular motor has many occupancy
states, each having a different effect on the motor motion.
The overall effect of the chemical reaction on the motor
motion can be characterized by the motor potential profile.
We are going to discuss the mathematical framework and the
numerical method for constructing motor potential profiles.
We are also going to discuss the chemical efficiency and
mechanical efficiency defined based on motor potential profile
and discuss their implications for motor mechanisms.

Some problems in the modeling and analysis of quasi-static evolution in brittle fracture

Speaker: 

Dr C. Larsen

Institution: 

WPI and Caltech

Time: 

Monday, March 13, 2006 - 4:00pm

Location: 

MSTB 254

Based on Griffith's criterion for crack growth,
a method was recently proposed for determining
crack paths by taking continuous-time limits
of discrete-time variational problems. This has
been successfully carried out, but an important
difference remains between these solutions and
Griffith's model. I will explain the method and
the main issues in its implementation, and
then describe the remaining gap and some
efforts to remove it.

Cloaking: science fiction or reality?

Speaker: 

Professor G. Milton

Institution: 

University of Utah

Time: 

Tuesday, March 7, 2006 - 1:00pm

Location: 

MSTB 254

The making of an object invisible through some cloaking device is
commonly regarded as science fiction. But we have found that cloaking
might be realized. Specifically, regions of anomalous localized
resonance, such as occur near superlenses, are shown to lead to
cloaking effects. This occurs when the resonant field generated by a polarizable
line or point dipole acts back on the polarizable line or point
dipole and effectively cancels the field acting on it from outside sources, so it
has essentially no response to the external field. Numerically we see
that the polarizable line or point dipole is effectively
invisible to the external time harmonic field. Cloaking is proved
in the quasistatic limit for finite collections of polarizable line
dipoles that all lie within a specific distance from a coated cylinder
having a shell dielectric constant close to -1 and a matrix and
core dielectric constant close to 1. Cloaking is also shown to
extend to the Veselago superlens outside the quasistatic regime: a
polarizable line dipole located less than a distance d/2 from the lens,
where d is lens thickness, will be cloaked due to the presence of
a resonant field in front of the lens. Also a polarizable point dipole
near a slab lens will be cloaked in the quasistatic limit. The hope
of using cloaking to see the interior of an object by making half of
it invisible remains an intriguing possibility. This is joint
work with Nicolae Nicorovici.

Homogenized limits in visual transduction: The role of the incisures

Speaker: 

Prof. E. DiBenedetto

Institution: 

Vanderbilt

Time: 

Monday, March 20, 2006 - 4:00pm

Location: 

MSTB 254

We will compute homogenized limits for the diffusion
of second messengers in the Ros Outer Segments (ROS)
of vertebrates, in visual transduction, when spike--like
incisures are presents in the receptors discs. The layered
structure of the cytoplasm and the presence of incisures,
present topological limitations to compactness. We will
present an homogenization limiting procedure based on
extension of functions with concave modulus of continuity.

We discuss also the physiological significance of the incisures
and present a spectrum of numerical simulations.

Computing shadow boundary and optimizing visibility

Speaker: 

Prof. R. Tsai

Institution: 

University of Texas at Austin

Time: 

Monday, April 10, 2006 - 4:00pm

Location: 

MSTB 254

We discuss an algorithm for capturing the shadow boundary in the
context of simplied high frequency wave propagation.
This requires solving efficiently a non-standard Hamilton-Jacobi
equation. We present the corresponding analysis, algorithms, and
extensions. This type of algorithms is potentially useful in locating
the shadow boundaries in a simple and robust way.
The second part of the talk focusses on our results in optimization of
visibility. This includes, for example, finding the shortest path to
see multiple objects at once, and path design under visual
surveillance considerations.

Modeling of blood clotting under flow

Speaker: 

Prof. A. Fogelson

Institution: 

University of Utah

Time: 

Monday, April 3, 2006 - 4:00pm

Location: 

MSTB 254

Normal intravascular blood clotting (hemostasis) and its pathological
counterpart, thrombosis, occur under flow and this can profoundly
influence the progress of clot formation. This talk will focus on two
different aspects of our efforts to model and probe the interactions
of flow and clotting. One involves the biochemistry of the
coagulation enzyme network and how the behavior of this system is
affected by flow-mediated platelet deposition on an injury and by
flow-mediated transport of the enzymes and their precursors. The
other involves a continuum model that describes platelet thrombosis
initiated by a ruptured atherosclerotic plaque in a
coronary-artery-sized vessel. This model includes full treatment of
the fluid dynamics, and the aggregation of platelets in response to
the plaque rupture and further chemical signals. Among the behaviors
seen with this model are the growth of wall-adherent platelet thrombi
to occlude the vessel and stop the flow, and the transient growth and
subsequent embolization of thrombi leaving behind a passivated injured
surface.

Phase field modeling and simulation of vesicle membranes

Speaker: 

Prof. Q. Du

Institution: 

Penn State University

Time: 

Monday, April 17, 2006 - 4:00pm

Location: 

MSTB 254

In this talk, we report some recent works on the phase field
modeling and simulations of the vesicle membrane deformation
under elastic bending energy and the interaction with
background fluid flows. We illustrate the effectiveness of
the phase field modeling through simulations of recent
biological experiments on two-component membranes. We also
make connections of the phase field model to the well-known
Willmore problem in differential geometry and the Gamma
convergence of nonlinear functionals in the calculus of
variation. We also discuss how to effectively retrieve
topological information within the phase field framework
which may have broad applications.

The Mechanics and Mathematics of Elastic Growth

Speaker: 

Dr A. Goriely

Institution: 

University of Arizona

Time: 

Monday, April 24, 2006 - 4:00pm

Location: 

MSTB 254

Growth is involved in many fundamental biological processes such as
morphogenesis, physiological regulation, or pathological disorders.
It is, in general, a process of enormous complexity involving
genetic, biochemical, and physical components at many different
scales and with complex interactions. In this talk, I will consider
the modeling of elastic growth in elastic materials and investigate
its mechanical consequences. First, starting with simple system in
one two and three dimensions, I will show how to generalize the
classical theory of exact elasticity to include growth. Second, we
will see that growth affects the geometry of a body by changing
typical length scales but also its mechanics by inducing residual
stresses. The competition between these two effects can be used to
regulate the physical properties of a material during regular
physiological conditions. It can also lead to interesting spontaneous
instabilities in growing materials as observed in simple physical
systems.

Mean value theorems and local regularity theorem for Ricci flow

Speaker: 

Professor Lei Ni

Institution: 

UCSD

Time: 

Tuesday, March 14, 2006 - 4:00pm

Location: 

MSTB 254

We shall show a general mean value theorem on Riemannian manifold and how it leads to new monotonicity formulae for evloving metrics. As an application we show a local regularity theorem for Ricci flow.

I shall start from the Euclidean mean value theorem and its variations. The first part should be accesible for graduate student.

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