Interface dynamics and shape control in fluids, materials and bio-systems

Speaker: 

Visiting Assistant Professor Shuwang Li

Institution: 

UCI

Time: 

Monday, November 5, 2007 - 4:00pm

Location: 

MSTB 254

Many multiphysics problems involve time-dependent free boundaries (or
interfaces) where the interface motion is controlled by interactions
among microscopic forces (e.g. surface tension) and external
macroscopic driving forces (e.g. far-field temperature or heat flux
for solidification problems, external flow for biomembranes). During
the evolution, the moving interface experiences instability due to the
imbalance of forces. In the first part of this talk, we consider the
Hele-Shaw problem (Saffman-Taylor instability) and crystal growth
problem (Mullins-Sekerka instability). We will show how these
instabilities can be suppressed using appropriate boundary
conditions. In particular, we demonstrate the existence of
self-similar evolving, symmetric universal patterns. In the second
part of this talk, we consider a bio-membrane problem. We will discuss
the model and show how surface tension can be used to control the
phase decomposition along the surface of the membrane. In particular,
we demonstrate how flow, morphology and phase decomposition are
coupled during the dynamics.

Numerical Methods of Electromagnetics for Complex Inhomogenous Systems

Speaker: 

Professor Wei Cai

Institution: 

University of North Carolina at Charlotte

Time: 

Monday, October 29, 2007 - 4:00pm

Location: 

MSTB 254

Fast and accurate computation of electromagnetic phenomena plays an important role in understanding the underlying physics for many complex physical and biological systems, such as lasing in optical fiber lasers, electrostatics forces in solvation model of biomolecules, and irradiation damage in materials under extreme conditions. In this talk, we will present two new algorithm developments with applications in these areas.

Image Charge Approximations of Reaction Fields and FMM for Charges inside a Dielectric Sphere

The reaction field of a charge inside a dielectric sphere, induced by a surrounding dissimilar dielectric medium, has applications in the study of electrostatic forces in the defect evolutions in material under extreme neutron irradiation, and hybrid explicit/implicit solvation models for biomolecules. In both cases, the long range Coulomb interactions have been identified as of primary influence in materials resistance to amorphorization under extreme conditions in the first case, and the free energy and the solvation study of biomolecules for the second. We have developed new discrete image charge approximations for the reaction field of a charge inside a dielectric sphere at high accuracy with only 2-3 image charges. Based on this result, we have extended the Fast Multipole Method to calculate the electrostatic interactions of charges inside or outside a dielectric sphere. The resulting O(N) algorithm has applications in computational materials and biology.

A Generalized Discontinuous Galerkin (GDG) Method based on Split Distributions for PDE with Nonsmooth Solutions

To model optical wave propagations in inhomogenous waveguides under the paraxial approximation, we need to solve time dependent Schrödinger equations with nonsmooth solutions as a result of field discontinuities at material interfaces. We will present a new type of discontinuous Galerkin method based on split distributions and their incorporations into the PDEs to account for jumps in solutions and derivatives. Special integration by parts formula for the split distributions is developed. The resulting generalized discontinuous Galerkin (GDG) method will be flexible to handle various types of interface jump conditions (time dependent and nonlinear) with high accuracy and easy to extend to multi-dimensional and other type PDEs with nonsmooth solutions. A full vector GDG-BPM (beam propagation method) will be developed to study gain guided fiber laser for efficient generations of high energy power sources.

A Posteriori Error Estimation in Finite Element Method

Speaker: 

Professor Zhiqiang Cai

Institution: 

Purdue University

Time: 

Monday, October 22, 2007 - 4:00pm

Location: 

MSTB 254

All computational results obtained from computer simulations of
physical phenomena involve numerical error. Discretization error can
be large, pervasive, unpredictable by classical heuristic means, and
can invalidate numerical predictions. The {\it a posteriori} error
estimation is a mathematical theory for estimating and quantifying
discretization error based on information gained during the current
stage of the computation. In this talk, I will first give an
introductory review of existing {\it a posteriori} error estimators,
and then introduce two new estimators. One of them is a modification
of the recovery-based estimator and the other is exactly equal to
the true error in an ``energy'' norm on any given mesh. Numerical
examples will also be presented.

Multi-scale Geometric Modeling of 3D Cardiac Myocytes from Light/Electron Microscopy Imaging Data

Speaker: 

Postdoctoral Scholar Zeyun Yu

Institution: 

UCSD

Time: 

Monday, October 15, 2007 - 4:00pm

Location: 

MSTB 254

The geometries of sub-cellular structures in cardiac myocytes play a critical role in regulating the cells' functions. We present a chain of image and geometric processing approaches for constructing multi-scale and realistic models of 3D cardiac cells. Two types of imaging data are considered: one is the confocal light microscopy images of whole cells and the other is the electron microscopy images of individual calcium release units (CRUs). Images are pre-processed by anisotropic filtering and contrast enhancement techniques. Sub-cellular structures are extracted by automatic image analysis approaches including 3D image segmentation and skeletonization. High quality surface and volumetric meshes are generated for finite element simulation of excitation-contraction (E-C) coupling in cardiac myocytes.

Variational Implicit Solvent Modeling and Level-Set Calculation of Biomolecular Structure and Interaction

Speaker: 

Associate Professor Bo Li

Institution: 

UCSD

Time: 

Monday, October 8, 2007 - 4:00pm

Location: 

MSTB 254

Understanding biomolecules, their structures and interactions
with solvent such as water, is essential to revealing mechanisms
and functions of biological systems. While atomistic simulations
that treat both solvent and solute molecules explicitly are
usually more accurate, implicit or continuum solvent models for
biomolecules are far more efficient. In this talk, I will first
introduce a new class of accurate implicit solvent models, termed variational implicit solvent models, for biomolecules. Central in this model is a free energy functional of all admissible
solute-solvent interfaces, coupling both nonpolar and polar
contributions of an underlying system. An energy-minimizing
interface then defines a molecular surface in solution. I will
then describe a level-set method for the numerical calculation of equilibrium solvent-solute interface and free-energy for the
solvation of nonpolar molecules, and present extensive numerical results with comparison to molecular dynamics simulations. This is joint work with Jianwei Che, Li-Tien Cheng, Joachim Dzubiella, J. Andy McCammon, and Yang Xie.

Some Fast Numerical Methods Based on Semiseparable Rank Structured Matrices

Speaker: 

Adjunct Assistant Professor Jianlin Xia

Institution: 

UCLA

Time: 

Monday, October 1, 2007 - 4:00pm

Location: 

MSTB 254

This talk discusses some fast numerical methods using certain rank
structured matrices: sequentially semiseparable (SSS) matrices
and hierarchically semiseparable (HSS) matrices. I will first
briefly show an example using semiseparable matrices: to find
polynomial roots and to estimate their conditions in $O(n^2)$ flops
instead of classical $O(n^3)$, where $n$ is the degree of the
polynomial. Then I will discuss in detail a superfast multifrontal
type direct method for large discretized linear systems. Rank
structures in the multifrontal method for certain discretized
matrices are exploited. Then semiseparable matrices are used
to approximate dense frontal and update matrices in the elimination.
A generalized semiseparable type factorization is obtained in linear
time. The overall sover has nearly linear complexity, linear storage,
and good potential for parallelization. It can also work as an
effective preconditioner.

Fun with zeta and L-functions of graphs

Speaker: 

Audrey Terras

Institution: 

UCSD

Time: 

Saturday, October 27, 2007 - 4:00pm

Location: 

McDonnell Douglas Engineering Auditorium

I will present an introduction to zeta and L-functions of graphs by comparison with the zeta and L-functions of number theory. Basic properties will be discussed, including: the Ihara formula saying that the zeta function is the reciprocal of a polynomial. I will then explore graph analogs of the Riemann hypothesis, the prime number theorem, Chebotarev's density theorem, zero (pole) spacings, and connections with expander graphs and quantum chaos. References include my joint papers with Harold Stark in Advances in Mathematics. There is also a book I am writing on my website.

Serre's conjecture

Speaker: 

Chandrashekhar Khare

Institution: 

UCLA

Time: 

Saturday, October 27, 2007 - 2:30pm

Location: 

McDonnell Douglas Engineering Auditorium

I will spend most of the time formulating Serre's conjecture and explaining some of its applications: for instance, it implies Artin's conjecture for 2-dimensional odd complex representations of the absolute Galois group of Q. I will sketch some of the main ideas in the recent proof of the conjecture in joint work with Wintenberger, as completed by Kisin. I will also explain, if time permits, how our work offers a fresh perspective on Wiles' proof of Fermat's Last Theorem (FLT). For instance it gives a diiferent, in a sense more elementary, aproach to Ribet's level lowering results, a key ingredient in the proof of FLT.

Integral models for toroidal compactifications of Shimura varieties

Speaker: 

Elena Mantovan

Institution: 

Caltech

Time: 

Saturday, October 27, 2007 - 11:30am

Location: 

McDonnell Douglas Engineering Auditorium

In the case of good reduction, smooth integral models for Shimura varieties of PEL type have been constructed by Faltings and Chai. In my talk I'll describe how their construction can be extended to the cases of bad reduction at unramified primes, and discuss the geometry of the resulting spaces. A useful tool in this context is provided by the language of 1-motives. This is joint work with Ben Moonen.

Special values of L functions modulo p

Speaker: 

Vinayak Vatsal

Institution: 

University of British Columbia

Time: 

Saturday, October 27, 2007 - 10:00am

Location: 

McDonnell Douglas Engineering Auditorium

It has been known since Euler that the values of the Riemann zeta function at negative integers are certain rational numbers, namely the Bernoulli numbers Bk. Similarly, the values of Dirichlet L-functions at s=0 are related to class numbers of certain number fields. These are simple instances of a common phenomenon, namely that the values of L-functions at critical points are algebraic, up to a simple factor, and that these algebraic numbers are related to algebraic quantities such as class numbers and Selmer groups. The present talk will be a survey talk on the algebraicity of special values of L-functions and their divisibility properties modulo primes.

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